Codes

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<Preprocessing>

• FuNP (Fusion of Neuroimaging Preprocessing Pipeline: MATLAB-based T1w and fMRI preprocessing)
  https://github.com/CAMIN-neuro/FuNP
  https://gitlab.com/by9433/funp
   

• MICAPIPE (Bash script for multimodal MRI preprocessing)
  https://github.com/MICA-MNI/micapipe
   

<Segmentation>

• DEWS (DEep White matter hyperintensity Segmentation framework)
  https://gitlab.com/by9433/dews
   

• Connectivity-Based Parcellation using fMRI time series
  https://gitlab.com/by9433/cbp
   

<Brain tools & Stats & Data>

• BrainSpace (Generate connectome gradients)
  https://github.com/MICA-MNI/BrainSpace
   

• ENIGMA Toolbox (statistics, macro- and micro-scale contextulaziation, visualization)
  https://github.com/MICA-MNI/ENIGMA
   

• BrainStat (A toolbox for statistical analysis of neuroimaging data)
  https://github.com/MICA-MNI/BrainStat
   

• SurfStat (Surface- and volume-based statistical analysis and visualization)
  https://www.math.mcgill.ca/keith/surfstat/
   

• Group-level template gradients for multimodal connectivity analysis
  https://github.com/CAMIN-neuro/caminopen/tree/master/gradient_align

 

<Feature calculation & Machine learning>

• GAN-MAT (Generative Adversarial Network-based Microstructural profile covariance Analysis Toolbox)
  https://github.com/CAMIN-neuro/GAN-MAT

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• Manifold features (manifold eccentricity, subcortical-weighted manifold, wiring distance)
  https://github.com/MICA-MNI/micaopen/tree/master/manifold_features
   

• Dynamic functional connectivity: hidden Markov model & sliding window
  https://gitlab.com/by9433/dynamicconnectivity
   

• Subgroup identification of eating behaviors using latent features from an autoencoder model
  https://github.com/gudtls17/EatBehav.RepresentLearning

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• Between-group comparison using autoencoder-based latent features and integrated gradient techniques
  https://github.com/CAMIN-neuro/caminopen/tree/master/Feature_representation_learning_autism
   

• Functional connectivity pattern of obesity
  https://gitlab.com/by9433/fcobesity
   

• Stepwise functional connectivity for obesity
  https://github.com/hebinalee/SFC_obesity
   

• Lag structure for fMRI time series: Infer directionality
  https://gitlab.com/by9433/lagstructure
   

• A neuroimaging marker for predicting longitudinal changes in pain intensity
  https://gitlab.com/by9433/bigpainproject